Others

From Biocourse

erletor

TMDET
Gene Expression Viewer
PermutMatrix
CyDAS
Grid Cellware
CoC
PSIbase
The Graphical Query Language(GQL)
A Knowledge
ADAPT
ArrayCyGHt
Mega2
PLEX
PathBinderH
MtbRegList
MamMiBase
DATF
WebAllergen
METIS
Doelan
MILVA
BADASP
Virtual Footprint / PRODORIC / GBPro
FSPMA
BiQ Analyzer
GSMA
Medusa
ISER
QUASAR
mILD
ConFind
PreCys
cQC
Athena
Suffix-tree analyser(STAN)
MACiE
ATID
HapSim
OxfordGrid
MESHI
PAWE-3D
HAPLOT
ROCR
CREDO
GARSA
SuMo
ORIOGEN
Sfold
CoGenT
NdPASA
Phylogenetic trees
REGA HIV-1 subtyping tool
pIQPNNI
Dasty and UniProt DAS
CGHMultiArray
ABNER
Entrex Gene
GMCheck
SDMinP
SCHIP
HCPM
PMUT
GPS
SymmDock
RDP2
SIM-plex
OntologyTraverser
BRIGEP
WebGestalt
RibEx
TOUCAN 2
ISTECH Analyzer
Assembly PCR Oligo Marker
DINAMelt
dnaMATE
Stitchprofiles.uio.no
PySCeS
ade4 and seqinR packages
SNP cherry picker
Microarray data assembler
QuickLIMS
U-primer
Pedstrip
Bio- programming tools
PCE
PRISM
POPSCOMP
ProTeus
Statistics
SiteEngine
VisANT
haplotype blocks
Matrix2png
r8s
pathSCOUT
Wrapping up BLAST and other applications for use on Unix clusters
APE
CHOiSS for selection of single uncleotide polymorphism markes on interval regulaity
WebVar
Qdist-quartet distance between evoiutionary thees 
A general computational model of mitochondrial metabolism in a whole or ganelle scale
Lumberjack
ConSSeq
SCANMS
Identifying multiple alignment regions satisfying simple formulas and patterns
F2CS
Ligand Depot
MuSIC
DAS-Tmfilter server
PedSplit
Bellerophon
MedPost
Drawing phylogenetic trees in LATEX and Microsoft Word
INCA
YAdumper
An interactive triple-helical collagen builder
Pedro
PerPrimer
The SRS 3D module
Data mining in bioformatics using weka
The PDB-Preview database
SIMCOAL 2.0
Sfixem-graphical sequence feature display in Java
GenomeMixer
MathSBML
A System for automated bacterial (genome) integrated annotation-SABIA
PaVEsy
The database of epoxide hydrolases and haloalkane dehalogenases
A collaborative database of inbred mouse strain characteristics
ClutrFree
Rainbow
Thermodynamics of enzyme-catalyzed reactions-a database for quantitative Biochemistry 
Tigrscan and GlimmerHMM
FigSearch
GeneRecords
CoPS
Cmmand line tool for calculating theoretical MS spectra for given sequences
Bio-Mirror project for public bio-data distribution
GOLDsurfer
lga972
Java Treeview-extensible visualization of microarray data
QuickJoin-fast neighbour-joining tree reconstruction
SNPicker
BioSilico
A web protal for classification of expression data using maximal margin linear programing
Phan 3D
BioNetGen 
Breakpoint identification and smoothing of array comparative genomic hybridization data
CSB.DB
PLPMDB
Visrd-visual recombination detection
MedlineR
The JigCell Model Builder and Run Manager
PCOAT
Ontologies for Behavior
limmaGUI
NMRb
GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
The European Bioinformatics Institute web site: a new view
MatArray
TRAIT
MENDB
PedNavigator
Cellerator
Perfect phylogeny haplotyper(PPH)
EPPS
RECSIM and INDSTATS
VEMS
MARAN
Do current sequence analysis algorithms disclose multifunctional (moonlighting) proteins?
BioEditor
BioQuery
Zerg
Ligand-Info
VisCoSe
The PCR Suite
CVD
Longest biased interval and longest non-negative sum interval
COmplete GENome Tracking (COGENT)
MrBayes 3
UniFrag and GenomePrimer
QAlign
CGH-Plotter
SignalViewer
E-CELL 2
Web-based exchange of biochemical information
An XML message broker framework for exchange and integration of microarray data
Soap-HT-BLAST
Parallel BLAST on split databases
ROBIN
seq
GandrKB
GOR V
MADE4
VariScan
POSBIOTM-NER
Centrifuge
BEST
HMM logos
MollDE
Meta-DP
twilight
MesoRD
STARS
NodMutDB
EMPReSS
S-SPatt
TFBScluster
TAMO
TreeLD
INTERALIGN
jPHYDIT
Dynamite Extended
PDB file parser and structure class implemented in Python
BioWareDB
BLASTplusplus
NCL
SNOW
bioperl
bl2seq
BLASTCLUST
blastall
blastpgp
BOXSHADE
clustalw
Clustal X
consed
Dotter
EMBOSS
Gibbs
GridGrinder
Local BLAST
MaskerAid
megablast
MEME
mfold
MULTICLUSTAL
NCBI C Toolkit
njplot
PHYLIP
Phyml
PolyPhred
Puzzleboot
R
readseq
RNAMOT
rpsblast
seaview
staden
tree-puzzle
trnascanse
vista
weighbor